This class retrieves all information from an HDF5 file. More...

#include <HDF5CF.h>

Inheritance diagram for HDF5CF::File:

Collaboration diagram for HDF5CF::File:

Public Member Functions
virtual void	Add_Supplement_Attrs (bool)
	Add supplemental attributes such as fullpath and original name.

virtual void	Adjust_Dim_Name ()=0
	Adjust dimension names based on different products.

virtual void	Adjust_Obj_Name ()=0
	Adjust object names based on different products.

virtual void	Flatten_Obj_Name (bool)
	Flatten the object name.

virtual const std::string &	Get_Ignored_Msg ()=0
	Obtain the message that contains the ignored object info.

virtual bool	Get_IgnoredInfo_Flag ()=0
	Obtain the flag to see if ignored objects should be generated.

const std::vector< Attribute * > &	getAttributes () const
	Public interface to obtain information of all attributes under the root group.

bool	getDap4 () const

hid_t	getFileID () const
	Obtain the HDF5 file ID.

const std::vector< Group * > &	getGroups () const
	Public interface to obtain all the group info.

bool	getIsCOARD () const

const std::string &	getPath () const
	Obtain the path of the file.

const std::vector< Var * > &	getVars () const
	Public interface to obtain information of all variables.

virtual void	Handle_Coor_Attr ()=0
	Handle "coordinates" attributes.

virtual void	Handle_CVar ()=0
	Handle coordinate variables.

virtual void	Handle_DimNameClashing ()=0

template<class T>
void	Handle_General_NameClashing (set< string > &objnameset, vector< T * > &objvec)

virtual void	Handle_Grid_Mapping_Vars ()
	Handle Grid Mapping Vars.

virtual void	Handle_SpVar ()=0
	Handle special variables.

virtual void	Handle_SpVar_Attr ()=0
	Handle special variable attributes.

virtual void	Handle_SpVar_DMR ()=0
	Handle Special variable and attributes for DMR.

virtual void	Handle_Unsupported_Dspace (bool)
	Handle unsupported HDF5 dataspaces for datasets.

virtual void	Handle_Unsupported_Dtype (bool)
	Handle unsupported HDF5 datatypes.

virtual void	Handle_Unsupported_Others (bool)
	Handle other unmapped objects/attributes.

virtual bool	Have_Grid_Mapping_Attrs ()
	Check if having Grid Mapping Attrs.

bool	HaveUnlimitedDim () const
	Has unlimited dimensions.

virtual void	Retrieve_H5_CVar_Supported_Attr_Values ()=0
	Retrieve coordinate variable attributes.

virtual void	Retrieve_H5_Info (const char *path, hid_t file_id, bool)

virtual void	Retrieve_H5_Supported_Attr_Values ()
	Retrieve attribute values for the supported HDF5 datatypes.

virtual void	Retrieve_H5_Var_Attr_Values (Var *var)
	Retrieve attribute values for a variable.

void	setDap4 (bool is_dap4)

Protected Member Functions
void	add_ignored_droplongstr_hdr ()

void	add_ignored_grp_longstr_info (const std::string &grp_path, const std::string &attr_name)

void	add_ignored_info_attrs (bool is_grp, const std::string &obj_path, const std::string &attr_name)

void	add_ignored_info_links (const std::string &link_name)

void	add_ignored_info_links_header ()

void	add_ignored_info_namedtypes (const std::string &, const std::string &)

void	add_ignored_info_obj_header ()

void	add_ignored_info_objs (bool is_dim_related, const std::string &obj_path)

void	add_ignored_info_page_header ()

void	add_ignored_var_longstr_info (const Var var, const Attribute attr)

void	add_no_ignored_info ()

void	Add_One_FakeDim_Name (Dimension *dim)

void	Add_One_Float_Attr (Attribute *attr, const std::string &attrname, float float_value) const

void	Add_Str_Attr (Attribute *attr, const std::string &attrname, const std::string &strvalue) const

void	Adjust_Duplicate_FakeDim_Name (Dimension *dim)

void	Adjust_Duplicate_FakeDim_Name2 (Dimension *dim, int dup_dim_size_index)

void	Change_Attr_One_Str_to_Others (Attribute attr, const Var var) const

bool	Check_DropLongStr (const Var var, const Attribute attr)

std::string	Check_Grid_Mapping_FullPath (const std::string &attr_value) const

std::string	Check_Grid_Mapping_VarName (const std::string &attr_value, const std::string &var_full_path) const

bool	Check_VarDropLongStr (const std::string &varpath, const std::vector< Dimension * > &, H5DataType) const

	File (const char *h5_path, hid_t file_id)

void	Gen_DimScale_VarAttr_Unsupported_Dtype_Info ()

void	Gen_Group_Unsupported_Dtype_Info ()

virtual void	Gen_Unsupported_Dspace_Info ()

virtual void	Gen_Unsupported_Dtype_Info (bool)=0

void	Gen_Var_Unsupported_Dtype_Info ()

virtual void	Gen_VarAttr_Unsupported_Dtype_Info ()

virtual std::string	get_CF_string (std::string)

template<typename T>
void	Handle_General_NameClashing (std::set< std::string > &objnameset, std::vector< T * > &objvec)

void	Handle_GeneralObj_NameClashing (bool, std::set< std::string > &objnameset)

void	Handle_Group_NameClashing (std::set< std::string > &objnameset)

void	Handle_Group_Unsupported_Dtype ()

void	Handle_GroupAttr_Unsupported_Dspace ()

void	Handle_Obj_AttrNameClashing ()

void	Handle_Var_NameClashing (std::set< std::string > &objnameset)

void	Handle_Var_Unsupported_Dtype ()

void	Handle_VarAttr_Unsupported_Dspace ()

void	Handle_VarAttr_Unsupported_Dtype ()

bool	has_latlon_cf_units (Attribute *attr, const std::string &varfullpath, bool is_lat)

bool	ignored_dimscale_ref_list (const Var *var) const

void	Insert_One_NameSizeMap_Element (const std::string &name, hsize_t size, bool unlimited)

void	Insert_One_NameSizeMap_Element2 (std::map< std::string, hsize_t > &, std::map< std::string, bool > &, const std::string &name, hsize_t size, bool unlimited) const

bool	Is_geolatlon (const std::string &var_name, bool is_lat) const

bool	Is_Str_Attr (Attribute *attr, const std::string &varfullpath, const std::string &attrname, const std::string &strvalue)

bool	is_var_under_group (const std::string &varname, const std::string &grpname, const int var_rank, std::vector< size_t > &var_size) const

void	release_standalone_var_vector (std::vector< Var * > &vars)

void	remove_netCDF_internal_attributes (bool include_attr)

void	Replace_Var_Attrs (const Var src, Var target)

void	Replace_Var_Info (const Var src, Var target)

void	Replace_Var_Str_Attr (Var *var, const std::string &attr_name, const std::string &strvalue)

void	Retrieve_H5_Attr_Info (Attribute *, hid_t obj_id, const int j, bool &unsup_attr_dtype, bool &unsup_attr_dspace) const

void	Retrieve_H5_Attr_Value (Attribute *attr, const std::string &) const

void	Retrieve_H5_Obj (hid_t grp_id, const char *gname, bool include_attr)

float	Retrieve_H5_VarCompRatio (const Var *, const hid_t) const

void	Retrieve_H5_VarDim (Var *, hid_t dset_id, const std::string &varname, bool &unsup_var_dspace)

void	Retrieve_H5_VarType (Var *, hid_t dset_id, const std::string &varname, bool &unsup_var_dtype) const

std::string	Retrieve_Str_Attr_Value (Attribute *attr, const std::string &var_path) const

Protected Attributes
bool	_is_dap4 = false

int	addeddimindex = 0

bool	check_ignored = false

std::map< std::string, hsize_t >	dimname_to_dimsize

std::map< std::string, bool >	dimname_to_unlimited

std::set< std::string >	dimnamelist

std::map< hsize_t, std::string >	dimsize_to_fakedimname
	Handle added dimension names.

std::vector< std::pair< hsize_t, std::string > >	dup_dimsize_dimname

hid_t	fileid

std::vector< Group * >	groups
	Non-root group vectors.

bool	have_ignored = false

bool	have_udim = false

std::string	ignored_msg

bool	iscoard = false

std::string	path

std::vector< Attribute * >	root_attrs
	Root attribute vectors.

hid_t	rootid = -1

bool	unsupported_attr_dspace = false

bool	unsupported_attr_dtype = false

bool	unsupported_var_attr_dspace = false

bool	unsupported_var_dspace = false

bool	unsupported_var_dtype = false

std::vector< Var * >	vars
	Var vectors.

Detailed Description

This class retrieves all information from an HDF5 file.

Definition at line 559 of file HDF5CF.h.

Constructor & Destructor Documentation

◆ ~File()

File::~File ( )

virtual

Definition at line 145 of file HDF5CF.cc.

◆ File()

HDF5CF::File::File	(	const char *	h5_path,
		hid_t	file_id )

inlineprotected

Definition at line 774 of file HDF5CF.h.

Member Function Documentation

◆ add_ignored_droplongstr_hdr()

void File::add_ignored_droplongstr_hdr ( )

protected

Definition at line 2803 of file HDF5CF.cc.

◆ add_ignored_grp_longstr_info()

void File::add_ignored_grp_longstr_info	(	const std::string &	grp_path,
		const std::string &	attr_name )

protected

Definition at line 2783 of file HDF5CF.cc.

◆ add_ignored_info_attrs()

void File::add_ignored_info_attrs	(	bool	is_grp,
		const std::string &	obj_path,
		const std::string &	attr_name )

protected

Definition at line 2451 of file HDF5CF.cc.

◆ add_ignored_info_links()

void File::add_ignored_info_links ( const std::string & link_name )

protected

Definition at line 2421 of file HDF5CF.cc.

◆ add_ignored_info_links_header()

void File::add_ignored_info_links_header ( )

protected

Definition at line 2381 of file HDF5CF.cc.

◆ add_ignored_info_namedtypes()

void File::add_ignored_info_namedtypes	(	const std::string &	,
		const std::string &	)

protected

Definition at line 2430 of file HDF5CF.cc.

◆ add_ignored_info_obj_header()

void File::add_ignored_info_obj_header ( )

protected

Definition at line 2356 of file HDF5CF.cc.

◆ add_ignored_info_objs()

void File::add_ignored_info_objs	(	bool	is_dim_related,
		const std::string &	obj_path )

protected

Definition at line 2484 of file HDF5CF.cc.

◆ add_ignored_info_page_header()

void File::add_ignored_info_page_header ( )

protected

Definition at line 2349 of file HDF5CF.cc.

◆ add_ignored_var_longstr_info()

void File::add_ignored_var_longstr_info	(	const Var *	var,
		const Attribute *	attr )

protected

Definition at line 2790 of file HDF5CF.cc.

◆ add_no_ignored_info()

void File::add_no_ignored_info ( )

protected

Definition at line 2514 of file HDF5CF.cc.

◆ Add_One_FakeDim_Name()

void File::Add_One_FakeDim_Name ( Dimension * dim )

protected

Definition at line 1585 of file HDF5CF.cc.

◆ Add_One_Float_Attr()

void File::Add_One_Float_Attr	(	Attribute *	attr,
		const std::string &	attrname,
		float	float_value ) const

protected

Definition at line 1836 of file HDF5CF.cc.

◆ Add_Str_Attr()

void File::Add_Str_Attr	(	Attribute *	attr,
		const std::string &	attrname,
		const std::string &	strvalue ) const

protected

Definition at line 1766 of file HDF5CF.cc.

◆ Add_Supplement_Attrs()

void File::Add_Supplement_Attrs ( bool add_path )

virtual

Add supplemental attributes such as fullpath and original name.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 2027 of file HDF5CF.cc.

◆ Adjust_Dim_Name()

virtual void HDF5CF::File::Adjust_Dim_Name ( )

pure virtual

Adjust dimension names based on different products.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Adjust_Duplicate_FakeDim_Name()

void File::Adjust_Duplicate_FakeDim_Name ( Dimension * dim )

protected

Definition at line 1638 of file HDF5CF.cc.

◆ Adjust_Duplicate_FakeDim_Name2()

void File::Adjust_Duplicate_FakeDim_Name2	(	Dimension *	dim,
		int	dup_dim_size_index )

protected

Definition at line 1678 of file HDF5CF.cc.

◆ Adjust_Obj_Name()

virtual void HDF5CF::File::Adjust_Obj_Name ( )

pure virtual

Adjust object names based on different products.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Change_Attr_One_Str_to_Others()

void File::Change_Attr_One_Str_to_Others	(	Attribute *	attr,
		const Var *	var ) const

protected

Definition at line 1848 of file HDF5CF.cc.

◆ Check_DropLongStr()

bool File::Check_DropLongStr	(	const Var *	var,
		const Attribute *	attr )

protected

Definition at line 2557 of file HDF5CF.cc.

◆ Check_Grid_Mapping_FullPath()

string File::Check_Grid_Mapping_FullPath ( const std::string & attr_value ) const

protected

Definition at line 2253 of file HDF5CF.cc.

◆ Check_Grid_Mapping_VarName()

string File::Check_Grid_Mapping_VarName	(	const std::string &	attr_value,
		const std::string &	var_full_path ) const

protected

Definition at line 2237 of file HDF5CF.cc.

◆ Check_VarDropLongStr()

bool File::Check_VarDropLongStr	(	const std::string &	varpath,
		const std::vector< Dimension * > &	,
		H5DataType	) const

protected

Definition at line 2588 of file HDF5CF.cc.

◆ Flatten_Obj_Name()

void File::Flatten_Obj_Name ( bool include_attr )

virtual

Flatten the object name.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 1376 of file HDF5CF.cc.

◆ Gen_DimScale_VarAttr_Unsupported_Dtype_Info()

void File::Gen_DimScale_VarAttr_Unsupported_Dtype_Info ( )

protected

Definition at line 1185 of file HDF5CF.cc.

◆ Gen_Group_Unsupported_Dtype_Info()

void File::Gen_Group_Unsupported_Dtype_Info ( )

protected

Definition at line 1057 of file HDF5CF.cc.

◆ Gen_Unsupported_Dspace_Info()

void File::Gen_Unsupported_Dspace_Info ( )

protectedvirtual

Definition at line 1305 of file HDF5CF.cc.

◆ Gen_Var_Unsupported_Dtype_Info()

void File::Gen_Var_Unsupported_Dtype_Info ( )

protected

Definition at line 1116 of file HDF5CF.cc.

◆ Gen_VarAttr_Unsupported_Dtype_Info()

void File::Gen_VarAttr_Unsupported_Dtype_Info ( )

protectedvirtual

Definition at line 1159 of file HDF5CF.cc.

◆ get_CF_string()

string File::get_CF_string ( std::string )

protectedvirtual

Definition at line 1525 of file HDF5CF.cc.

◆ Get_Ignored_Msg()

virtual const std::string & HDF5CF::File::Get_Ignored_Msg ( )

pure virtual

Obtain the message that contains the ignored object info.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Get_IgnoredInfo_Flag()

virtual bool HDF5CF::File::Get_IgnoredInfo_Flag ( )

pure virtual

Obtain the flag to see if ignored objects should be generated.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ getAttributes()

const std::vector< Attribute * > & HDF5CF::File::getAttributes ( ) const

inline

Public interface to obtain information of all attributes under the root group.

Definition at line 645 of file HDF5CF.h.

◆ getDap4()

bool HDF5CF::File::getDap4 ( ) const

inline

Definition at line 666 of file HDF5CF.h.

◆ getFileID()

hid_t HDF5CF::File::getFileID ( ) const

inline

Obtain the HDF5 file ID.

Definition at line 627 of file HDF5CF.h.

◆ getGroups()

const std::vector< Group * > & HDF5CF::File::getGroups ( ) const

inline

Public interface to obtain all the group info.

Definition at line 651 of file HDF5CF.h.

◆ getIsCOARD()

bool HDF5CF::File::getIsCOARD ( ) const

inline

Definition at line 671 of file HDF5CF.h.

◆ getPath()

const std::string & HDF5CF::File::getPath ( ) const

inline

Obtain the path of the file.

Definition at line 633 of file HDF5CF.h.

◆ getVars()

const std::vector< Var * > & HDF5CF::File::getVars ( ) const

inline

Public interface to obtain information of all variables.

Definition at line 639 of file HDF5CF.h.

◆ Handle_Coor_Attr()

virtual void HDF5CF::File::Handle_Coor_Attr ( )

pure virtual

Handle "coordinates" attributes.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Handle_CVar()

virtual void HDF5CF::File::Handle_CVar ( )

pure virtual

Handle coordinate variables.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Handle_DimNameClashing()

virtual void HDF5CF::File::Handle_DimNameClashing ( )

pure virtual

Handle dimension name clashing. Since COARDS requires the change of cv names, So we need to handle dimension name clashing specially.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Handle_General_NameClashing()

template<class T>

void HDF5CF::File::Handle_General_NameClashing	(	set< string > &	objnameset,
		vector< T * > &	objvec )

Definition at line 1470 of file HDF5CF.cc.

◆ Handle_GeneralObj_NameClashing()

void File::Handle_GeneralObj_NameClashing	(	bool	,
		std::set< std::string > &	objnameset )

protected

Definition at line 1514 of file HDF5CF.cc.

◆ Handle_Grid_Mapping_Vars()

void File::Handle_Grid_Mapping_Vars ( )

virtual

Handle Grid Mapping Vars.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 2208 of file HDF5CF.cc.

◆ Handle_Group_NameClashing()

void File::Handle_Group_NameClashing ( std::set< std::string > & objnameset )

protected

Definition at line 1411 of file HDF5CF.cc.

◆ Handle_Group_Unsupported_Dtype()

void File::Handle_Group_Unsupported_Dtype ( )

protected

Definition at line 1016 of file HDF5CF.cc.

◆ Handle_GroupAttr_Unsupported_Dspace()

void File::Handle_GroupAttr_Unsupported_Dspace ( )

protected

Definition at line 1214 of file HDF5CF.cc.

◆ Handle_Obj_AttrNameClashing()

void File::Handle_Obj_AttrNameClashing ( )

protected

Definition at line 1439 of file HDF5CF.cc.

◆ Handle_SpVar()

virtual void HDF5CF::File::Handle_SpVar ( )

pure virtual

Handle special variables.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Handle_SpVar_Attr()

virtual void HDF5CF::File::Handle_SpVar_Attr ( )

pure virtual

Handle special variable attributes.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Handle_SpVar_DMR()

virtual void HDF5CF::File::Handle_SpVar_DMR ( )

pure virtual

Handle Special variable and attributes for DMR.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Handle_Unsupported_Dspace()

void File::Handle_Unsupported_Dspace ( bool include_attr )

virtual

Handle unsupported HDF5 dataspaces for datasets.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 1279 of file HDF5CF.cc.

◆ Handle_Unsupported_Dtype()

void File::Handle_Unsupported_Dtype ( bool include_attr )

virtual

Handle unsupported HDF5 datatypes.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 922 of file HDF5CF.cc.

◆ Handle_Unsupported_Others()

void File::Handle_Unsupported_Others ( bool include_attr )

virtual

Handle other unmapped objects/attributes.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 1326 of file HDF5CF.cc.

◆ Handle_Var_NameClashing()

void File::Handle_Var_NameClashing ( std::set< std::string > & objnameset )

protected

Definition at line 1404 of file HDF5CF.cc.

◆ Handle_Var_Unsupported_Dtype()

void File::Handle_Var_Unsupported_Dtype ( )

protected

Definition at line 1096 of file HDF5CF.cc.

◆ Handle_VarAttr_Unsupported_Dspace()

void File::Handle_VarAttr_Unsupported_Dspace ( )

protected

Definition at line 1254 of file HDF5CF.cc.

◆ Handle_VarAttr_Unsupported_Dtype()

void File::Handle_VarAttr_Unsupported_Dtype ( )

protected

Definition at line 1136 of file HDF5CF.cc.

◆ has_latlon_cf_units()

bool File::has_latlon_cf_units	(	Attribute *	attr,
		const std::string &	varfullpath,
		bool	is_lat )

protected

Definition at line 1822 of file HDF5CF.cc.

◆ Have_Grid_Mapping_Attrs()

bool File::Have_Grid_Mapping_Attrs ( )

virtual

Check if having Grid Mapping Attrs.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 2191 of file HDF5CF.cc.

◆ HaveUnlimitedDim()

bool HDF5CF::File::HaveUnlimitedDim ( ) const

inline

Has unlimited dimensions.

Definition at line 657 of file HDF5CF.h.

◆ ignored_dimscale_ref_list()

bool File::ignored_dimscale_ref_list ( const Var * var ) const

protected

Definition at line 2523 of file HDF5CF.cc.

◆ Insert_One_NameSizeMap_Element()

void File::Insert_One_NameSizeMap_Element	(	const std::string &	name,
		hsize_t	size,
		bool	unlimited )

protected

Definition at line 1542 of file HDF5CF.cc.

◆ Insert_One_NameSizeMap_Element2()

void File::Insert_One_NameSizeMap_Element2	(	std::map< std::string, hsize_t > &	,
		std::map< std::string, bool > &	,
		const std::string &	name,
		hsize_t	size,
		bool	unlimited ) const

protected

Definition at line 1557 of file HDF5CF.cc.

◆ Is_geolatlon()

bool File::Is_geolatlon	(	const std::string &	var_name,
		bool	is_lat ) const

protected

Definition at line 2004 of file HDF5CF.cc.

◆ Is_Str_Attr()

bool File::Is_Str_Attr	(	Attribute *	attr,
		const std::string &	varfullpath,
		const std::string &	attrname,
		const std::string &	strvalue )

protected

Definition at line 1810 of file HDF5CF.cc.

◆ is_var_under_group()

bool File::is_var_under_group	(	const std::string &	varname,
		const std::string &	grpname,
		const int	var_rank,
		std::vector< size_t > &	var_size ) const

protected

Definition at line 2164 of file HDF5CF.cc.

◆ release_standalone_var_vector()

void File::release_standalone_var_vector ( std::vector< Var * > & vars )

protected

Definition at line 2817 of file HDF5CF.cc.

◆ remove_netCDF_internal_attributes()

void File::remove_netCDF_internal_attributes ( bool include_attr )

protected

Definition at line 2266 of file HDF5CF.cc.

◆ Replace_Var_Attrs()

void File::Replace_Var_Attrs	(	const Var *	src,
		Var *	target )

protected

Definition at line 2132 of file HDF5CF.cc.

◆ Replace_Var_Info()

void File::Replace_Var_Info	(	const Var *	src,
		Var *	target )

protected

Definition at line 2075 of file HDF5CF.cc.

◆ Replace_Var_Str_Attr()

void File::Replace_Var_Str_Attr	(	Var *	var,
		const std::string &	attr_name,
		const std::string &	strvalue )

protected

Definition at line 1968 of file HDF5CF.cc.

◆ Retrieve_H5_Attr_Info()

void File::Retrieve_H5_Attr_Info	(	Attribute *	attr,
		hid_t	obj_id,
		const int	j,
		bool &	unsup_attr_dtype,
		bool &	unsup_attr_dspace ) const

protected

Definition at line 594 of file HDF5CF.cc.

◆ Retrieve_H5_Attr_Value()

void File::Retrieve_H5_Attr_Value	(	Attribute *	attr,
		const std::string &	) const

protected

Definition at line 760 of file HDF5CF.cc.

◆ Retrieve_H5_CVar_Supported_Attr_Values()

virtual void HDF5CF::File::Retrieve_H5_CVar_Supported_Attr_Values ( )

pure virtual

Retrieve coordinate variable attributes.

Implemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

◆ Retrieve_H5_Info()

void File::Retrieve_H5_Info	(	const char *	path,
		hid_t	file_id,
		bool	include_attr )

virtual

Retrieve DDS information from the HDF5 file. The reason to separate reading DDS from DAS is: DAP needs to hold all values of attributes in the memory, building DDS doesn't need the attributes. So to reduce huge memory allocation for some HDF5 files, we separate the access of DAS from DDS although internally they still share common routines.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 170 of file HDF5CF.cc.

◆ Retrieve_H5_Obj()

void File::Retrieve_H5_Obj	(	hid_t	grp_id,
		const char *	gname,
		bool	include_attr )

protected

Definition at line 231 of file HDF5CF.cc.

◆ Retrieve_H5_Supported_Attr_Values()

void File::Retrieve_H5_Supported_Attr_Values ( )

virtual

Retrieve attribute values for the supported HDF5 datatypes.

Reimplemented in HDF5CF::EOS5File, and HDF5CF::GMFile.

Definition at line 735 of file HDF5CF.cc.

◆ Retrieve_H5_Var_Attr_Values()

void File::Retrieve_H5_Var_Attr_Values ( Var * var )

virtual

Retrieve attribute values for a variable.

Definition at line 753 of file HDF5CF.cc.

◆ Retrieve_H5_VarCompRatio()

float File::Retrieve_H5_VarCompRatio	(	const Var *	var,
		const hid_t	dset_id ) const

protected

Definition at line 453 of file HDF5CF.cc.

◆ Retrieve_H5_VarDim()

void File::Retrieve_H5_VarDim	(	Var *	,
		hid_t	dset_id,
		const std::string &	varname,
		bool &	unsup_var_dspace )

protected

Definition at line 521 of file HDF5CF.cc.

◆ Retrieve_H5_VarType()

void File::Retrieve_H5_VarType	(	Var *	,
		hid_t	dset_id,
		const std::string &	varname,
		bool &	unsup_var_dtype ) const

protected

Definition at line 487 of file HDF5CF.cc.

◆ Retrieve_Str_Attr_Value()

string File::Retrieve_Str_Attr_Value	(	Attribute *	attr,
		const std::string &	var_path ) const

protected

Definition at line 1797 of file HDF5CF.cc.

◆ setDap4()

void HDF5CF::File::setDap4 ( bool is_dap4 )

inline

Definition at line 662 of file HDF5CF.h.

Member Data Documentation

◆ _is_dap4

bool HDF5CF::File::_is_dap4 = false

protected

Definition at line 815 of file HDF5CF.h.

◆ addeddimindex

int HDF5CF::File::addeddimindex = 0

protected

Definition at line 809 of file HDF5CF.h.

◆ check_ignored

bool HDF5CF::File::check_ignored = false

protected

Definition at line 812 of file HDF5CF.h.

◆ dimname_to_dimsize

std::map<std::string, hsize_t> HDF5CF::File::dimname_to_dimsize

protected

Definition at line 802 of file HDF5CF.h.

◆ dimname_to_unlimited

std::map<std::string, bool> HDF5CF::File::dimname_to_unlimited

protected

Definition at line 805 of file HDF5CF.h.

◆ dimnamelist

std::set<std::string> HDF5CF::File::dimnamelist

protected

Definition at line 800 of file HDF5CF.h.

◆ dimsize_to_fakedimname

std::map<hsize_t, std::string> HDF5CF::File::dimsize_to_fakedimname

protected

Handle added dimension names.

Definition at line 808 of file HDF5CF.h.

◆ dup_dimsize_dimname

std::vector<std::pair<hsize_t, std::string> > HDF5CF::File::dup_dimsize_dimname

protected

Definition at line 810 of file HDF5CF.h.

◆ fileid

hid_t HDF5CF::File::fileid

protected

Definition at line 781 of file HDF5CF.h.

◆ groups

std::vector<Group*> HDF5CF::File::groups

protected

Non-root group vectors.

Definition at line 791 of file HDF5CF.h.

◆ have_ignored

bool HDF5CF::File::have_ignored = false

protected

Definition at line 813 of file HDF5CF.h.

◆ have_udim

bool HDF5CF::File::have_udim = false

protected

Definition at line 814 of file HDF5CF.h.

◆ ignored_msg

std::string HDF5CF::File::ignored_msg

protected

Definition at line 817 of file HDF5CF.h.

◆ iscoard

bool HDF5CF::File::iscoard = false

protected

Definition at line 816 of file HDF5CF.h.

◆ path

std::string HDF5CF::File::path

protected

Definition at line 780 of file HDF5CF.h.

◆ root_attrs

std::vector<Attribute *> HDF5CF::File::root_attrs

protected

Root attribute vectors.

Definition at line 788 of file HDF5CF.h.

◆ rootid

hid_t HDF5CF::File::rootid = -1

protected

Definition at line 782 of file HDF5CF.h.

◆ unsupported_attr_dspace

bool HDF5CF::File::unsupported_attr_dspace = false

protected

Definition at line 797 of file HDF5CF.h.

◆ unsupported_attr_dtype

bool HDF5CF::File::unsupported_attr_dtype = false

protected

Definition at line 794 of file HDF5CF.h.

◆ unsupported_var_attr_dspace

bool HDF5CF::File::unsupported_var_attr_dspace = false

protected

Definition at line 798 of file HDF5CF.h.

◆ unsupported_var_dspace

bool HDF5CF::File::unsupported_var_dspace = false

protected

Definition at line 796 of file HDF5CF.h.

◆ unsupported_var_dtype

bool HDF5CF::File::unsupported_var_dtype = false

protected

Definition at line 793 of file HDF5CF.h.

◆ vars

std::vector<Var *> HDF5CF::File::vars

protected

Var vectors.

Definition at line 785 of file HDF5CF.h.

The documentation for this class was generated from the following files:

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ ~File()

◆ File()

Member Function Documentation

◆ add_ignored_droplongstr_hdr()

◆ add_ignored_grp_longstr_info()

◆ add_ignored_info_attrs()

◆ add_ignored_info_links()

◆ add_ignored_info_links_header()

◆ add_ignored_info_namedtypes()

◆ add_ignored_info_obj_header()

◆ add_ignored_info_objs()

◆ add_ignored_info_page_header()

◆ add_ignored_var_longstr_info()

◆ add_no_ignored_info()

◆ Add_One_FakeDim_Name()

◆ Add_One_Float_Attr()

◆ Add_Str_Attr()

◆ Add_Supplement_Attrs()

◆ Adjust_Dim_Name()

◆ Adjust_Duplicate_FakeDim_Name()

◆ Adjust_Duplicate_FakeDim_Name2()

◆ Adjust_Obj_Name()

◆ Change_Attr_One_Str_to_Others()

◆ Check_DropLongStr()

◆ Check_Grid_Mapping_FullPath()

◆ Check_Grid_Mapping_VarName()

◆ Check_VarDropLongStr()

◆ Flatten_Obj_Name()

◆ Gen_DimScale_VarAttr_Unsupported_Dtype_Info()

◆ Gen_Group_Unsupported_Dtype_Info()

◆ Gen_Unsupported_Dspace_Info()

◆ Gen_Var_Unsupported_Dtype_Info()

◆ Gen_VarAttr_Unsupported_Dtype_Info()

◆ get_CF_string()

◆ Get_Ignored_Msg()

◆ Get_IgnoredInfo_Flag()

◆ getAttributes()

◆ getDap4()

◆ getFileID()

◆ getGroups()

◆ getIsCOARD()

◆ getPath()

◆ getVars()

◆ Handle_Coor_Attr()

◆ Handle_CVar()

◆ Handle_DimNameClashing()

◆ Handle_General_NameClashing()

◆ Handle_GeneralObj_NameClashing()

◆ Handle_Grid_Mapping_Vars()

◆ Handle_Group_NameClashing()

◆ Handle_Group_Unsupported_Dtype()

◆ Handle_GroupAttr_Unsupported_Dspace()

◆ Handle_Obj_AttrNameClashing()

◆ Handle_SpVar()

◆ Handle_SpVar_Attr()

◆ Handle_SpVar_DMR()

◆ Handle_Unsupported_Dspace()

◆ Handle_Unsupported_Dtype()

◆ Handle_Unsupported_Others()

◆ Handle_Var_NameClashing()

◆ Handle_Var_Unsupported_Dtype()

◆ Handle_VarAttr_Unsupported_Dspace()

◆ Handle_VarAttr_Unsupported_Dtype()

◆ has_latlon_cf_units()

◆ Have_Grid_Mapping_Attrs()

◆ HaveUnlimitedDim()

◆ ignored_dimscale_ref_list()

◆ Insert_One_NameSizeMap_Element()

◆ Insert_One_NameSizeMap_Element2()

◆ Is_geolatlon()

◆ Is_Str_Attr()

◆ is_var_under_group()

◆ release_standalone_var_vector()

◆ remove_netCDF_internal_attributes()

◆ Replace_Var_Attrs()