This class is a derived class of File. It includes methods applied to general HDF5 files only. More...

#include <HDF5CF.h>

Inheritance diagram for HDF5CF::GMFile:

Collaboration diagram for HDF5CF::GMFile:

Public Member Functions
void	Add_Dim_Name ()
	Add dimension name.

void	Add_Path_Coord_Attr ()
	Update the coordinate attribute to include path and also flatten.

void	Add_Supplement_Attrs (bool) override
	Add supplemental attributes such as fullpath and original name for general NASA HDF5 products.

void	Adjust_Dim_Name () override
	Adjust dimension name for general NASA HDF5 products.

void	Adjust_H5_Attr_Value (Attribute *attr) const
	Adjust attribute values for general HDF5 products.

void	Adjust_Obj_Name () override
	Adjust object names based on different general NASA HDF5 products.

void	Flatten_Obj_Name (bool include_attr) override
	Flatten the object name for general NASA HDF5 products.

const std::string &	Get_Ignored_Msg () override
	Get the message that contains the ignored obj. info.

bool	Get_IgnoredInfo_Flag () override
	Obtain ignored info. flag.

const std::vector< Attribute * > &	getAttributes () const
	Public interface to obtain information of all attributes under the root group.

const std::vector< GMCVar * > &	getCVars () const

bool	getDap4 () const

hid_t	getFileID () const
	Obtain the HDF5 file ID.

const std::vector< Group * > &	getGroups () const
	Public interface to obtain all the group info.

bool	getIsCOARD () const

const std::string &	getPath () const
	Obtain the path of the file.

H5GCFProduct	getProductType () const

const std::vector< GMSPVar * > &	getSPVars () const

const std::vector< Var * > &	getVars () const
	Public interface to obtain information of all variables.

	GMFile (const char *path, hid_t file_id, H5GCFProduct product, GMPattern gproduct_pattern)

void	Handle_Coor_Attr () override
	Handle "coordinates" attributes for general HDF5 products.

void	Handle_CVar () override
	Handle coordinate variables for general NASA HDF5 products.

void	Handle_DimNameClashing () override

template<class T>
void	Handle_General_NameClashing (set< string > &objnameset, vector< T * > &objvec)

void	Handle_Grid_Mapping_Vars () override
	Handle Grid Mapping Vars.

void	Handle_Hybrid_EOS5 ()

void	Handle_Obj_NameClashing (bool)
	Handle object name clashing for general NASA HDF5 products.

void	Handle_SpVar () override
	Handle special variables for general NASA HDF5 products.

void	Handle_SpVar_Attr () override
	Handle special variable attributes for general NASA HDF5 products.

void	Handle_SpVar_DMR () override

void	Handle_Unsupported_Dspace (bool) override
	Handle unsupported HDF5 dataspaces for general HDF5 products.

void	Handle_Unsupported_Dtype (bool) override
	Handle unsupported HDF5 datatypes for general HDF5 products.

void	Handle_Unsupported_Others (bool) override
	Handle other unmapped objects/attributes for general HDF5 products.

bool	Have_Grid_Mapping_Attrs () override
	Check if having Grid Mapping Attrs.

bool	HaveUnlimitedDim () const
	Has unlimited dimensions.

bool	Is_Hybrid_EOS5 () const

bool	is_special_gpm_l3 () const

void	Remove_Unneeded_Objects ()
	Remove unneeded objects.

void	Remove_Unused_FakeDimVars ()
	Unsupported datatype array may generate FakeDim. Remove them.

void	Rename_NC4_NonCoordVars () const
	Remove the _nc4_non_coord from the variable new names.

void	Retrieve_H5_CVar_Supported_Attr_Values () override
	Retrieve coordinate variable attributes.

void	Retrieve_H5_Info (const char *path, hid_t file_id, bool include_attr) override
	Retrieve DDS information from the HDF5 file; real implementation for general HDF5 products.

void	Retrieve_H5_Supported_Attr_Values () override
	Retrieve attribute values for the supported HDF5 datatypes for general HDF5 products.

virtual void	Retrieve_H5_Var_Attr_Values (Var *var)
	Retrieve attribute values for a variable.

void	setDap4 (bool is_dap4)

void	Update_Bounds_Attr ()
	Update the Bounds attribute to follow the CF conventions.

void	Update_NC4_PureDimSize ()
	Update the netCDF-4 pure dimension size when the pure dimension is an unlimited dimension.

void	Update_Product_Type ()
	Update "product type" attributes for general HDF5 products.

Protected Member Functions
void	Add_Aqu_Attrs ()

void	Add_Dim_Name_ACOS_L2S_OCO2_L1B ()

void	Add_Dim_Name_Aqu_L3 () const

void	Add_Dim_Name_Dimscale_General_Product ()

void	Add_Dim_Name_General_Product ()

void	Add_Dim_Name_GPM ()

void	Add_Dim_Name_LatLon1D_Or_CoordAttr_General_Product ()

void	Add_Dim_Name_LatLon2D_General_Product ()

void	Add_Dim_Name_Mea_Ozonel3z ()

void	Add_Dim_Name_Mea_SeaWiFS ()

void	Add_Dim_Name_OBPG_L3 ()

void	Add_Dim_Name_OSMAPL2S ()

void	Add_GPM_Attrs ()

void	add_ignored_droplongstr_hdr ()

void	add_ignored_grp_longstr_info (const std::string &grp_path, const std::string &attr_name)

void	add_ignored_info_attrs (bool is_grp, const std::string &obj_path, const std::string &attr_name)

void	add_ignored_info_links (const std::string &link_name)

void	add_ignored_info_links_header ()

void	add_ignored_info_namedtypes (const std::string &, const std::string &)

void	add_ignored_info_obj_header ()

void	add_ignored_info_objs (bool is_dim_related, const std::string &obj_path)

void	add_ignored_info_page_header ()

void	add_ignored_var_longstr_info (const Var var, const Attribute attr)

void	add_no_ignored_info ()

void	Add_One_FakeDim_Name (Dimension *dim)

void	Add_One_Float_Attr (Attribute *attr, const std::string &attrname, float float_value) const

void	Add_SeaWiFS_Attrs () const

void	Add_Str_Attr (Attribute *attr, const std::string &attrname, const std::string &strvalue) const

void	Add_UseDimscale_Var_Dim_Names_General_Product (const Var , const Attribute )

void	Add_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone (const Var , const Attribute )

void	Add_VarPath_In_Coordinates_Attr (Var *, const std::string &)

void	Adjust_Duplicate_FakeDim_Name (Dimension *dim)

void	Adjust_Duplicate_FakeDim_Name2 (Dimension *dim, int dup_dim_size_index)

void	Adjust_GPM_L3_Obj_Name () const

void	Adjust_Mea_Ozone_Obj_Name () const

void	Build_lat1D_latlon_candidate (const Var , const std::vector< Var > &)

void	Build_latg1D_latlon_candidate (Var , const std::vector< Var > &)

void	Build_unique_latlon_candidate ()

void	Change_Attr_One_Str_to_Others (Attribute attr, const Var var) const

bool	Check_1DGeolocation_Dimscale ()

bool	Check_And_Update_New_GPM_L3 ()

bool	check_cv (const std::string &varname) const

bool	Check_Dimscale_General_Product_Pattern ()

bool	Check_DropLongStr (const Var var, const Attribute attr)

void	Check_General_Product_Pattern ()

std::string	Check_Grid_Mapping_FullPath (const std::string &attr_value) const

std::string	Check_Grid_Mapping_VarName (const std::string &attr_value, const std::string &var_full_path) const

bool	Check_LatLon1D_General_Product_Pattern ()

bool	Check_LatLon1D_General_Product_Pattern_Name_Size (const std::string &latname, const std::string &lonname)

bool	Check_LatLon2D_General_Product_Pattern ()

bool	Check_LatLon2D_General_Product_Pattern_Name_Size (const std::string &latname, const std::string &lonname)

bool	Check_LatLon_With_Coordinate_Attr_General_Product_Pattern ()

bool	Check_Var_2D_CVars (Var *) const

bool	Check_VarDropLongStr (const std::string &varpath, const std::vector< Dimension * > &, H5DataType) const

bool	Coord_Match_LatLon_NameSize (const std::string &coord_values)

bool	Coord_Match_LatLon_NameSize_Same_Group (const std::string &coord_values, const std::string &var_path)

void	Correct_GPM_L1_LatLon_units (Var *var, const std::string &unit_value)

void	Create_Missing_CV (GMCVar *, const std::string &)

bool	Flatten_VarPath_In_Coordinates_Attr (Var *)

void	Gen_DimScale_VarAttr_Unsupported_Dtype_Info ()

void	Gen_GM_VarAttr_Unsupported_Dtype_Info ()

void	Gen_Group_Unsupported_Dtype_Info ()

void	Gen_Unsupported_Dspace_Info () override

void	Gen_Unsupported_Dtype_Info (bool) override

void	Gen_Var_Unsupported_Dtype_Info ()

void	Gen_VarAttr_Unsupported_Dtype_Info () override

std::string	get_CF_string (std::string s) override

template<typename T>
void	GMHandle_General_NameClashing (std::set< std::string > &objnameset, std::vector< T * > &objvec)

void	Handle_CVar_Aqu_L3 ()

void	Handle_CVar_Dimscale_General_Product ()

void	Handle_CVar_GPM_L1 ()

void	Handle_CVar_GPM_L3 ()

void	Handle_CVar_LatLon1D_General_Product ()

void	Handle_CVar_LatLon2D_General_Product ()

void	Handle_CVar_LatLon_General_Product ()

void	Handle_CVar_Mea_Ozone ()

void	Handle_CVar_Mea_SeaWiFS ()

void	Handle_CVar_OBPG_L3 ()

void	Handle_CVar_OSMAPL2S ()

template<typename T>
void	Handle_General_NameClashing (std::set< std::string > &objnameset, std::vector< T * > &objvec)

void	Handle_GeneralObj_NameClashing (bool, std::set< std::string > &objnameset)

void	Handle_GM_Unsupported_Dspace (bool)

void	Handle_GM_Unsupported_Dtype (bool)

void	Handle_GMCVar_AttrNameClashing ()

void	Handle_GMCVar_NameClashing (std::set< std::string > &)

void	Handle_GMSPVar_AttrNameClashing ()

void	Handle_GMSPVar_NameClashing (std::set< std::string > &)

void	Handle_GPM_l1_Coor_Attr () const

void	Handle_Group_NameClashing (std::set< std::string > &objnameset)

void	Handle_Group_Unsupported_Dtype ()

void	Handle_GroupAttr_Unsupported_Dspace ()

void	Handle_LatLon_With_CoordinateAttr_Coor_Attr ()

void	Handle_Obj_AttrNameClashing ()

void	Handle_SpVar_ACOS_OCO2 ()

void	Handle_UseDimscale_Var_Dim_Names_General_Product (Var *)

void	Handle_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone (Var *)

void	Handle_Var_NameClashing (std::set< std::string > &objnameset)

void	Handle_Var_Unsupported_Dtype ()

void	Handle_VarAttr_Unsupported_Dspace ()

void	Handle_VarAttr_Unsupported_Dtype ()

bool	has_latlon_cf_units (Attribute *attr, const std::string &varfullpath, bool is_lat)

bool	ignored_dimscale_ref_list (const Var *var) const

void	Insert_One_NameSizeMap_Element (const std::string &name, hsize_t size, bool unlimited)

void	Insert_One_NameSizeMap_Element2 (std::map< std::string, hsize_t > &, std::map< std::string, bool > &, const std::string &name, hsize_t size, bool unlimited) const

bool	Is_geolatlon (const std::string &var_name, bool is_lat) const

bool	Is_netCDF_Dimension (const Var *var) const

bool	Is_Str_Attr (Attribute *attr, const std::string &varfullpath, const std::string &attrname, const std::string &strvalue)

bool	is_var_under_group (const std::string &varname, const std::string &grpname, const int var_rank, std::vector< size_t > &var_size) const

void	Obtain_1DLatLon_CVs (std::vector< GMCVar * > &cvar_1dlat, std::vector< GMCVar * > &cvar_1dlon)

void	Obtain_2DLatLon_Vars (std::vector< Var * > &var_2dlat, std::vector< Var * > &var_2dlon, std::map< std::string, int > &latlon2d_path_to_index)

void	Obtain_2DLLCVar_Candidate (std::vector< Var * > &var_2dlat, std::vector< Var * > &var_2dlon, std::map< std::string, int > &latlon2d_path_to_index)

void	Obtain_2DLLVars_With_Dims_not_1DLLCVars (std::vector< Var * > &var_2dlat, std::vector< Var * > &var_2dlon, const std::vector< GMCVar * > &cvar_1dlat, const std::vector< GMCVar * > &cvar_1dlon, std::map< std::string, int > &latlon2d_path_to_index)

void	Obtain_unique_2dCV (std::vector< Var * > &, std::map< std::string, int > &)

void	release_standalone_GMCVar_vector (std::vector< GMCVar * > &tempgc_vars)

void	release_standalone_var_vector (std::vector< Var * > &vars)

void	Remove_2DLLCVar_Final_Candidate_from_Vars (std::vector< int > &)

bool	Remove_EOS5_Strings (std::string &) const

bool	Remove_EOS5_Strings_NonEOS_Fields (std::string &) const

void	remove_netCDF_internal_attributes (bool include_attr)

void	Remove_OMPSNPP_InputPointers ()

void	Replace_Var_Attrs (const Var src, Var target)

void	Replace_Var_Info (const Var src, Var target)

void	Replace_Var_Str_Attr (Var *var, const std::string &attr_name, const std::string &strvalue)

void	Retrieve_H5_Attr_Info (Attribute *, hid_t obj_id, const int j, bool &unsup_attr_dtype, bool &unsup_attr_dspace) const

void	Retrieve_H5_Attr_Value (Attribute *attr, const std::string &) const

void	Retrieve_H5_Obj (hid_t grp_id, const char *gname, bool include_attr)

float	Retrieve_H5_VarCompRatio (const Var *, const hid_t) const

void	Retrieve_H5_VarDim (Var *, hid_t dset_id, const std::string &varname, bool &unsup_var_dspace)

void	Retrieve_H5_VarType (Var *, hid_t dset_id, const std::string &varname, bool &unsup_var_dtype) const

std::string	Retrieve_Str_Attr_Value (Attribute *attr, const std::string &var_path) const

void	Update_M2DLatLon_Dimscale_CVs ()

Protected Attributes
bool	_is_dap4 = false

int	addeddimindex = 0

bool	check_ignored = false

std::map< std::string, hsize_t >	dimname_to_dimsize

std::map< std::string, bool >	dimname_to_unlimited

std::set< std::string >	dimnamelist

std::map< hsize_t, std::string >	dimsize_to_fakedimname
	Handle added dimension names.

std::vector< std::pair< hsize_t, std::string > >	dup_dimsize_dimname

hid_t	fileid

std::vector< Group * >	groups
	Non-root group vectors.

bool	have_ignored = false

bool	have_udim = false

std::string	ignored_msg

bool	iscoard = false

std::string	path

std::vector< Attribute * >	root_attrs
	Root attribute vectors.

hid_t	rootid = -1

bool	unsupported_attr_dspace = false

bool	unsupported_attr_dtype = false

bool	unsupported_var_attr_dspace = false

bool	unsupported_var_dspace = false

bool	unsupported_var_dtype = false

std::vector< Var * >	vars
	Var vectors.

Detailed Description

This class is a derived class of File. It includes methods applied to general HDF5 files only.

Definition at line 822 of file HDF5CF.h.

Constructor & Destructor Documentation

◆ GMFile()

GMFile::GMFile	(	const char *	path,
		hid_t	file_id,
		H5GCFProduct	product,
		GMPattern	gproduct_pattern )

Definition at line 130 of file HDF5GMCF.cc.

◆ ~GMFile()

GMFile::~GMFile ( )

override

Definition at line 137 of file HDF5GMCF.cc.

Member Function Documentation

◆ Add_Aqu_Attrs()

void GMFile::Add_Aqu_Attrs ( )

protected

Definition at line 5565 of file HDF5GMCF.cc.

◆ Add_Dim_Name()

void GMFile::Add_Dim_Name ( )

Add dimension name.

Definition at line 766 of file HDF5GMCF.cc.

◆ Add_Dim_Name_ACOS_L2S_OCO2_L1B()

void GMFile::Add_Dim_Name_ACOS_L2S_OCO2_L1B ( )

protected

Definition at line 1390 of file HDF5GMCF.cc.

◆ Add_Dim_Name_Aqu_L3()

void GMFile::Add_Dim_Name_Aqu_L3 ( ) const

protected

Definition at line 1298 of file HDF5GMCF.cc.

◆ Add_Dim_Name_Dimscale_General_Product()

void GMFile::Add_Dim_Name_Dimscale_General_Product ( )

protected

Definition at line 2621 of file HDF5GMCF.cc.

◆ Add_Dim_Name_General_Product()

void GMFile::Add_Dim_Name_General_Product ( )

protected

Definition at line 1406 of file HDF5GMCF.cc.

◆ Add_Dim_Name_GPM()

void GMFile::Add_Dim_Name_GPM ( )

protected

Definition at line 1206 of file HDF5GMCF.cc.

◆ Add_Dim_Name_LatLon1D_Or_CoordAttr_General_Product()

void GMFile::Add_Dim_Name_LatLon1D_Or_CoordAttr_General_Product ( )

protected

Definition at line 2576 of file HDF5GMCF.cc.

◆ Add_Dim_Name_LatLon2D_General_Product()

void GMFile::Add_Dim_Name_LatLon2D_General_Product ( )

protected

Definition at line 2414 of file HDF5GMCF.cc.

◆ Add_Dim_Name_Mea_Ozonel3z()

void GMFile::Add_Dim_Name_Mea_Ozonel3z ( )

protected

Definition at line 1060 of file HDF5GMCF.cc.

◆ Add_Dim_Name_Mea_SeaWiFS()

void GMFile::Add_Dim_Name_Mea_SeaWiFS ( )

protected

Definition at line 826 of file HDF5GMCF.cc.

◆ Add_Dim_Name_OBPG_L3()

void GMFile::Add_Dim_Name_OBPG_L3 ( )

protected

Definition at line 816 of file HDF5GMCF.cc.

◆ Add_Dim_Name_OSMAPL2S()

void GMFile::Add_Dim_Name_OSMAPL2S ( )

protected

Definition at line 1326 of file HDF5GMCF.cc.

◆ Add_GPM_Attrs()

void GMFile::Add_GPM_Attrs ( )

protected

Definition at line 5229 of file HDF5GMCF.cc.

◆ add_ignored_droplongstr_hdr()

void File::add_ignored_droplongstr_hdr ( )

protectedinherited

Definition at line 2803 of file HDF5CF.cc.

◆ add_ignored_grp_longstr_info()

void File::add_ignored_grp_longstr_info	(	const std::string &	grp_path,
		const std::string &	attr_name )

protectedinherited

Definition at line 2783 of file HDF5CF.cc.

◆ add_ignored_info_attrs()

void File::add_ignored_info_attrs	(	bool	is_grp,
		const std::string &	obj_path,
		const std::string &	attr_name )

protectedinherited

Definition at line 2451 of file HDF5CF.cc.

◆ add_ignored_info_links()

void File::add_ignored_info_links ( const std::string & link_name )

protectedinherited

Definition at line 2421 of file HDF5CF.cc.

◆ add_ignored_info_links_header()

void File::add_ignored_info_links_header ( )

protectedinherited

Definition at line 2381 of file HDF5CF.cc.

◆ add_ignored_info_namedtypes()

void File::add_ignored_info_namedtypes	(	const std::string &	,
		const std::string &	)

protectedinherited

Definition at line 2430 of file HDF5CF.cc.

◆ add_ignored_info_obj_header()

void File::add_ignored_info_obj_header ( )

protectedinherited

Definition at line 2356 of file HDF5CF.cc.

◆ add_ignored_info_objs()

void File::add_ignored_info_objs	(	bool	is_dim_related,
		const std::string &	obj_path )

protectedinherited

Definition at line 2484 of file HDF5CF.cc.

◆ add_ignored_info_page_header()

void File::add_ignored_info_page_header ( )

protectedinherited

Definition at line 2349 of file HDF5CF.cc.

◆ add_ignored_var_longstr_info()

void File::add_ignored_var_longstr_info	(	const Var *	var,
		const Attribute *	attr )

protectedinherited

Definition at line 2790 of file HDF5CF.cc.

◆ add_no_ignored_info()

void File::add_no_ignored_info ( )

protectedinherited

Definition at line 2514 of file HDF5CF.cc.

◆ Add_One_FakeDim_Name()

void File::Add_One_FakeDim_Name ( Dimension * dim )

protectedinherited

Definition at line 1585 of file HDF5CF.cc.

◆ Add_One_Float_Attr()

void File::Add_One_Float_Attr	(	Attribute *	attr,
		const std::string &	attrname,
		float	float_value ) const

protectedinherited

Definition at line 1836 of file HDF5CF.cc.

◆ Add_Path_Coord_Attr()

void GMFile::Add_Path_Coord_Attr ( )

Update the coordinate attribute to include path and also flatten.

Definition at line 6882 of file HDF5GMCF.cc.

◆ Add_SeaWiFS_Attrs()

void GMFile::Add_SeaWiFS_Attrs ( ) const

protected

Definition at line 5705 of file HDF5GMCF.cc.

◆ Add_Str_Attr()

void File::Add_Str_Attr	(	Attribute *	attr,
		const std::string &	attrname,
		const std::string &	strvalue ) const

protectedinherited

Definition at line 1766 of file HDF5CF.cc.

◆ Add_Supplement_Attrs()

void GMFile::Add_Supplement_Attrs ( bool add_path )

overridevirtual

Add supplemental attributes such as fullpath and original name for general NASA HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 5156 of file HDF5GMCF.cc.

◆ Add_UseDimscale_Var_Dim_Names_General_Product()

void GMFile::Add_UseDimscale_Var_Dim_Names_General_Product	(	const Var *	var,
		const Attribute *	dimlistattr )

protected

Definition at line 2713 of file HDF5GMCF.cc.

◆ Add_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone()

void GMFile::Add_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone	(	const Var *	var,
		const Attribute *	dimlistattr )

protected

Definition at line 921 of file HDF5GMCF.cc.

◆ Add_VarPath_In_Coordinates_Attr()

void GMFile::Add_VarPath_In_Coordinates_Attr	(	Var *	var,
		const std::string &	coor_value )

protected

Definition at line 6428 of file HDF5GMCF.cc.

◆ Adjust_Dim_Name()

void GMFile::Adjust_Dim_Name ( )

overridevirtual

Adjust dimension name for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 5097 of file HDF5GMCF.cc.

◆ Adjust_Duplicate_FakeDim_Name()

void File::Adjust_Duplicate_FakeDim_Name ( Dimension * dim )

protectedinherited

Definition at line 1638 of file HDF5CF.cc.

◆ Adjust_Duplicate_FakeDim_Name2()

void File::Adjust_Duplicate_FakeDim_Name2	(	Dimension *	dim,
		int	dup_dim_size_index )

protectedinherited

Definition at line 1678 of file HDF5CF.cc.

◆ Adjust_GPM_L3_Obj_Name()

void GMFile::Adjust_GPM_L3_Obj_Name ( ) const

protected

Definition at line 4830 of file HDF5GMCF.cc.

◆ Adjust_H5_Attr_Value()

void GMFile::Adjust_H5_Attr_Value ( Attribute * attr ) const

Adjust attribute values for general HDF5 products.

Definition at line 333 of file HDF5GMCF.cc.

◆ Adjust_Mea_Ozone_Obj_Name()

void GMFile::Adjust_Mea_Ozone_Obj_Name ( ) const

protected

Definition at line 4852 of file HDF5GMCF.cc.

◆ Adjust_Obj_Name()

void GMFile::Adjust_Obj_Name ( )

overridevirtual

Adjust object names based on different general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 4807 of file HDF5GMCF.cc.

◆ Build_lat1D_latlon_candidate()

void GMFile::Build_lat1D_latlon_candidate	(	const Var *	lat,
		const std::vector< Var * > &	lon_vec )

protected

Definition at line 2104 of file HDF5GMCF.cc.

◆ Build_latg1D_latlon_candidate()

void GMFile::Build_latg1D_latlon_candidate	(	Var *	lat,
		const std::vector< Var * > &	lon_vec )

protected

Definition at line 2164 of file HDF5GMCF.cc.

◆ Build_unique_latlon_candidate()

void GMFile::Build_unique_latlon_candidate ( )

protected

Definition at line 2271 of file HDF5GMCF.cc.

◆ Change_Attr_One_Str_to_Others()

void File::Change_Attr_One_Str_to_Others	(	Attribute *	attr,
		const Var *	var ) const

protectedinherited

Definition at line 1848 of file HDF5CF.cc.

◆ Check_1DGeolocation_Dimscale()

bool GMFile::Check_1DGeolocation_Dimscale ( )

protected

Definition at line 3488 of file HDF5GMCF.cc.

◆ Check_And_Update_New_GPM_L3()

bool GMFile::Check_And_Update_New_GPM_L3 ( )

protected

Definition at line 1545 of file HDF5GMCF.cc.

◆ check_cv()

bool GMFile::check_cv ( const std::string & varname ) const

protected

Definition at line 1182 of file HDF5GMCF.cc.

◆ Check_Dimscale_General_Product_Pattern()

bool GMFile::Check_Dimscale_General_Product_Pattern ( )

protected

Definition at line 1447 of file HDF5GMCF.cc.

◆ Check_DropLongStr()

bool File::Check_DropLongStr	(	const Var *	var,
		const Attribute *	attr )

protectedinherited

Definition at line 2557 of file HDF5CF.cc.

◆ Check_General_Product_Pattern()

void GMFile::Check_General_Product_Pattern ( )

protected

Definition at line 1432 of file HDF5GMCF.cc.

◆ Check_Grid_Mapping_FullPath()

string File::Check_Grid_Mapping_FullPath ( const std::string & attr_value ) const

protectedinherited

Definition at line 2253 of file HDF5CF.cc.

◆ Check_Grid_Mapping_VarName()

string File::Check_Grid_Mapping_VarName	(	const std::string &	attr_value,
		const std::string &	var_full_path ) const

protectedinherited

Definition at line 2237 of file HDF5CF.cc.

◆ Check_LatLon1D_General_Product_Pattern()

bool GMFile::Check_LatLon1D_General_Product_Pattern ( )

protected

Definition at line 1750 of file HDF5GMCF.cc.

◆ Check_LatLon1D_General_Product_Pattern_Name_Size()

bool GMFile::Check_LatLon1D_General_Product_Pattern_Name_Size	(	const std::string &	latname,
		const std::string &	lonname )

protected

Definition at line 1773 of file HDF5GMCF.cc.

◆ Check_LatLon2D_General_Product_Pattern()

bool GMFile::Check_LatLon2D_General_Product_Pattern ( )

protected

Definition at line 1606 of file HDF5GMCF.cc.

◆ Check_LatLon2D_General_Product_Pattern_Name_Size()

bool GMFile::Check_LatLon2D_General_Product_Pattern_Name_Size	(	const std::string &	latname,
		const std::string &	lonname )

protected

Definition at line 1630 of file HDF5GMCF.cc.

◆ Check_LatLon_With_Coordinate_Attr_General_Product_Pattern()

bool GMFile::Check_LatLon_With_Coordinate_Attr_General_Product_Pattern ( )

protected

Definition at line 1855 of file HDF5GMCF.cc.

◆ Check_Var_2D_CVars()

bool GMFile::Check_Var_2D_CVars ( Var * var ) const

protected

Definition at line 4069 of file HDF5GMCF.cc.

◆ Check_VarDropLongStr()

bool File::Check_VarDropLongStr	(	const std::string &	varpath,
		const std::vector< Dimension * > &	,
		H5DataType	) const

protectedinherited

Definition at line 2588 of file HDF5CF.cc.

◆ Coord_Match_LatLon_NameSize()

bool GMFile::Coord_Match_LatLon_NameSize ( const std::string & coord_values )

protected

Definition at line 6337 of file HDF5GMCF.cc.

◆ Coord_Match_LatLon_NameSize_Same_Group()

bool GMFile::Coord_Match_LatLon_NameSize_Same_Group	(	const std::string &	coord_values,
		const std::string &	var_path )

protected

Definition at line 6387 of file HDF5GMCF.cc.

◆ Correct_GPM_L1_LatLon_units()

void GMFile::Correct_GPM_L1_LatLon_units	(	Var *	var,
		const std::string &	unit_value )

protected

Definition at line 5533 of file HDF5GMCF.cc.

◆ Create_Missing_CV()

void GMFile::Create_Missing_CV	(	GMCVar *	GMcvar,
		const std::string &	dimname )

protected

Definition at line 6459 of file HDF5GMCF.cc.

◆ Flatten_Obj_Name()

void GMFile::Flatten_Obj_Name ( bool include_attr )

overridevirtual

Flatten the object name for general NASA HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 4888 of file HDF5GMCF.cc.

◆ Flatten_VarPath_In_Coordinates_Attr()

bool GMFile::Flatten_VarPath_In_Coordinates_Attr ( Var * var )

protected

Definition at line 4105 of file HDF5GMCF.cc.

◆ Gen_DimScale_VarAttr_Unsupported_Dtype_Info()

void File::Gen_DimScale_VarAttr_Unsupported_Dtype_Info ( )

protectedinherited

Definition at line 1185 of file HDF5CF.cc.

◆ Gen_GM_VarAttr_Unsupported_Dtype_Info()

void GMFile::Gen_GM_VarAttr_Unsupported_Dtype_Info ( )

protected

Definition at line 453 of file HDF5GMCF.cc.

◆ Gen_Group_Unsupported_Dtype_Info()

void File::Gen_Group_Unsupported_Dtype_Info ( )

protectedinherited

Definition at line 1057 of file HDF5CF.cc.

◆ Gen_Unsupported_Dspace_Info()

void GMFile::Gen_Unsupported_Dspace_Info ( )

overrideprotectedvirtual

Reimplemented from HDF5CF::File.

Definition at line 621 of file HDF5GMCF.cc.

◆ Gen_Unsupported_Dtype_Info()

void GMFile::Gen_Unsupported_Dtype_Info ( bool include_attr )

overrideprotectedvirtual

Implements HDF5CF::File.

Definition at line 421 of file HDF5GMCF.cc.

◆ Gen_Var_Unsupported_Dtype_Info()

void File::Gen_Var_Unsupported_Dtype_Info ( )

protectedinherited

Definition at line 1116 of file HDF5CF.cc.

◆ Gen_VarAttr_Unsupported_Dtype_Info()

void GMFile::Gen_VarAttr_Unsupported_Dtype_Info ( )

overrideprotectedvirtual

Reimplemented from HDF5CF::File.

Definition at line 434 of file HDF5GMCF.cc.

◆ get_CF_string()

string GMFile::get_CF_string ( std::string s )

overrideprotectedvirtual

Reimplemented from HDF5CF::File.

Definition at line 155 of file HDF5GMCF.cc.

◆ Get_Ignored_Msg()

const std::string & HDF5CF::GMFile::Get_Ignored_Msg ( )

inlineoverridevirtual

Get the message that contains the ignored obj. info.

Implements HDF5CF::File.

Definition at line 941 of file HDF5CF.h.

◆ Get_IgnoredInfo_Flag()

bool HDF5CF::GMFile::Get_IgnoredInfo_Flag ( )

inlineoverridevirtual

Obtain ignored info. flag.

Implements HDF5CF::File.

Definition at line 935 of file HDF5CF.h.

◆ getAttributes()

const std::vector< Attribute * > & HDF5CF::File::getAttributes ( ) const

inlineinherited

Public interface to obtain information of all attributes under the root group.

Definition at line 645 of file HDF5CF.h.

◆ getCVars()

const std::vector< GMCVar * > & HDF5CF::GMFile::getCVars ( ) const

inline

Definition at line 832 of file HDF5CF.h.

◆ getDap4()

bool HDF5CF::File::getDap4 ( ) const

inlineinherited

Definition at line 666 of file HDF5CF.h.

◆ getFileID()

hid_t HDF5CF::File::getFileID ( ) const

inlineinherited

Obtain the HDF5 file ID.

Definition at line 627 of file HDF5CF.h.

◆ getGroups()

const std::vector< Group * > & HDF5CF::File::getGroups ( ) const

inlineinherited

Public interface to obtain all the group info.

Definition at line 651 of file HDF5CF.h.

◆ getIsCOARD()

bool HDF5CF::File::getIsCOARD ( ) const

inlineinherited

Definition at line 671 of file HDF5CF.h.

◆ getPath()

const std::string & HDF5CF::File::getPath ( ) const

inlineinherited

Obtain the path of the file.

Definition at line 633 of file HDF5CF.h.

◆ getProductType()

H5GCFProduct HDF5CF::GMFile::getProductType ( ) const

inline

Definition at line 827 of file HDF5CF.h.

◆ getSPVars()

const std::vector< GMSPVar * > & HDF5CF::GMFile::getSPVars ( ) const

inline

Definition at line 837 of file HDF5CF.h.

◆ getVars()

const std::vector< Var * > & HDF5CF::File::getVars ( ) const

inlineinherited

Public interface to obtain information of all variables.

Definition at line 639 of file HDF5CF.h.

◆ GMHandle_General_NameClashing()

template<class T>

void GMFile::GMHandle_General_NameClashing	(	std::set< std::string > &	objnameset,
		std::vector< T * > &	objvec )

protected

Definition at line 4995 of file HDF5GMCF.cc.

◆ Handle_Coor_Attr()

void GMFile::Handle_Coor_Attr ( )

overridevirtual

Handle "coordinates" attributes for general HDF5 products.

Implements HDF5CF::File.

Definition at line 5887 of file HDF5GMCF.cc.

◆ Handle_CVar()

void GMFile::Handle_CVar ( )

overridevirtual

Handle coordinate variables for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 2847 of file HDF5GMCF.cc.

◆ Handle_CVar_Aqu_L3()

void GMFile::Handle_CVar_Aqu_L3 ( )

protected

Definition at line 3163 of file HDF5GMCF.cc.

◆ Handle_CVar_Dimscale_General_Product()

void GMFile::Handle_CVar_Dimscale_General_Product ( )

protected

Definition at line 3239 of file HDF5GMCF.cc.

◆ Handle_CVar_GPM_L1()

void GMFile::Handle_CVar_GPM_L1 ( )

protected

Definition at line 2885 of file HDF5GMCF.cc.

◆ Handle_CVar_GPM_L3()

void GMFile::Handle_CVar_GPM_L3 ( )

protected

Definition at line 2960 of file HDF5GMCF.cc.

◆ Handle_CVar_LatLon1D_General_Product()

void GMFile::Handle_CVar_LatLon1D_General_Product ( )

protected

Definition at line 4560 of file HDF5GMCF.cc.

◆ Handle_CVar_LatLon2D_General_Product()

void GMFile::Handle_CVar_LatLon2D_General_Product ( )

protected

Definition at line 4569 of file HDF5GMCF.cc.

◆ Handle_CVar_LatLon_General_Product()

void GMFile::Handle_CVar_LatLon_General_Product ( )

protected

Definition at line 4578 of file HDF5GMCF.cc.

◆ Handle_CVar_Mea_Ozone()

void GMFile::Handle_CVar_Mea_Ozone ( )

protected

Definition at line 3196 of file HDF5GMCF.cc.

◆ Handle_CVar_Mea_SeaWiFS()

void GMFile::Handle_CVar_Mea_SeaWiFS ( )

protected

Definition at line 3018 of file HDF5GMCF.cc.

◆ Handle_CVar_OBPG_L3()

void GMFile::Handle_CVar_OBPG_L3 ( )

protected

Definition at line 4647 of file HDF5GMCF.cc.

◆ Handle_CVar_OSMAPL2S()

void GMFile::Handle_CVar_OSMAPL2S ( )

protected

Definition at line 3085 of file HDF5GMCF.cc.

◆ Handle_DimNameClashing()

void GMFile::Handle_DimNameClashing ( )

overridevirtual

Handle dimension name clashing. Since COARDS requires the change of cv names, So we need to handle dimension name clashing specially.

Implements HDF5CF::File.

Definition at line 5038 of file HDF5GMCF.cc.

◆ Handle_General_NameClashing()

template<class T>

void HDF5CF::File::Handle_General_NameClashing	(	set< string > &	objnameset,
		vector< T * > &	objvec )

inherited

Definition at line 1470 of file HDF5CF.cc.

◆ Handle_GeneralObj_NameClashing()

void File::Handle_GeneralObj_NameClashing	(	bool	,
		std::set< std::string > &	objnameset )

protectedinherited

Definition at line 1514 of file HDF5CF.cc.

◆ Handle_GM_Unsupported_Dspace()

void GMFile::Handle_GM_Unsupported_Dspace ( bool include_attr )

protected

Definition at line 550 of file HDF5GMCF.cc.

◆ Handle_GM_Unsupported_Dtype()

void GMFile::Handle_GM_Unsupported_Dtype ( bool include_attr )

protected

Definition at line 362 of file HDF5GMCF.cc.

◆ Handle_GMCVar_AttrNameClashing()

void GMFile::Handle_GMCVar_AttrNameClashing ( )

protected

Definition at line 4968 of file HDF5GMCF.cc.

◆ Handle_GMCVar_NameClashing()

void GMFile::Handle_GMCVar_NameClashing ( std::set< std::string > & objnameset )

protected

Definition at line 4956 of file HDF5GMCF.cc.

◆ Handle_GMSPVar_AttrNameClashing()

void GMFile::Handle_GMSPVar_AttrNameClashing ( )

protected

Definition at line 4980 of file HDF5GMCF.cc.

◆ Handle_GMSPVar_NameClashing()

void GMFile::Handle_GMSPVar_NameClashing ( std::set< std::string > & objnameset )

protected

Definition at line 4962 of file HDF5GMCF.cc.

◆ Handle_GPM_l1_Coor_Attr()

void GMFile::Handle_GPM_l1_Coor_Attr ( ) const

protected

Definition at line 6128 of file HDF5GMCF.cc.

◆ Handle_Grid_Mapping_Vars()

void GMFile::Handle_Grid_Mapping_Vars ( )

overridevirtual

Handle Grid Mapping Vars.

Reimplemented from HDF5CF::File.

Definition at line 6802 of file HDF5GMCF.cc.

◆ Handle_Group_NameClashing()

void File::Handle_Group_NameClashing ( std::set< std::string > & objnameset )

protectedinherited

Definition at line 1411 of file HDF5CF.cc.

◆ Handle_Group_Unsupported_Dtype()

void File::Handle_Group_Unsupported_Dtype ( )

protectedinherited

Definition at line 1016 of file HDF5CF.cc.

◆ Handle_GroupAttr_Unsupported_Dspace()

void File::Handle_GroupAttr_Unsupported_Dspace ( )

protectedinherited

Definition at line 1214 of file HDF5CF.cc.

◆ Handle_Hybrid_EOS5()

void GMFile::Handle_Hybrid_EOS5 ( )

Definition at line 6547 of file HDF5GMCF.cc.

◆ Handle_LatLon_With_CoordinateAttr_Coor_Attr()

void GMFile::Handle_LatLon_With_CoordinateAttr_Coor_Attr ( )

protected

Definition at line 6306 of file HDF5GMCF.cc.

◆ Handle_Obj_AttrNameClashing()

void File::Handle_Obj_AttrNameClashing ( )

protectedinherited

Definition at line 1439 of file HDF5CF.cc.

◆ Handle_Obj_NameClashing()

void GMFile::Handle_Obj_NameClashing ( bool include_attr )

Handle object name clashing for general NASA HDF5 products.

Definition at line 4937 of file HDF5GMCF.cc.

◆ Handle_SpVar()

void GMFile::Handle_SpVar ( )

overridevirtual

Handle special variables for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 4719 of file HDF5GMCF.cc.

◆ Handle_SpVar_ACOS_OCO2()

void GMFile::Handle_SpVar_ACOS_OCO2 ( )

protected

Definition at line 4761 of file HDF5GMCF.cc.

◆ Handle_SpVar_Attr()

void GMFile::Handle_SpVar_Attr ( )

overridevirtual

Handle special variable attributes for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 6513 of file HDF5GMCF.cc.

◆ Handle_SpVar_DMR()

void HDF5CF::GMFile::Handle_SpVar_DMR ( )

inlineoverridevirtual

Handle special variables and attributes for general NASA HDF5 files(for DMR) Note this function is not used.

Implements HDF5CF::File.

Definition at line 884 of file HDF5CF.h.

◆ Handle_Unsupported_Dspace()

void GMFile::Handle_Unsupported_Dspace ( bool include_attr )

overridevirtual

Handle unsupported HDF5 dataspaces for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 538 of file HDF5GMCF.cc.

◆ Handle_Unsupported_Dtype()

void GMFile::Handle_Unsupported_Dtype ( bool include_attr )

overridevirtual

Handle unsupported HDF5 datatypes for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 351 of file HDF5GMCF.cc.

◆ Handle_Unsupported_Others()

void GMFile::Handle_Unsupported_Others ( bool include_attr )

overridevirtual

Handle other unmapped objects/attributes for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 629 of file HDF5GMCF.cc.

◆ Handle_UseDimscale_Var_Dim_Names_General_Product()

void GMFile::Handle_UseDimscale_Var_Dim_Names_General_Product ( Var * var )

protected

Definition at line 2647 of file HDF5GMCF.cc.

◆ Handle_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone()

void GMFile::Handle_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone ( Var * var )

protected

Definition at line 846 of file HDF5GMCF.cc.

◆ Handle_Var_NameClashing()

void File::Handle_Var_NameClashing ( std::set< std::string > & objnameset )

protectedinherited

Definition at line 1404 of file HDF5CF.cc.

◆ Handle_Var_Unsupported_Dtype()

void File::Handle_Var_Unsupported_Dtype ( )

protectedinherited

Definition at line 1096 of file HDF5CF.cc.

◆ Handle_VarAttr_Unsupported_Dspace()

void File::Handle_VarAttr_Unsupported_Dspace ( )

protectedinherited

Definition at line 1254 of file HDF5CF.cc.

◆ Handle_VarAttr_Unsupported_Dtype()

void File::Handle_VarAttr_Unsupported_Dtype ( )

protectedinherited

Definition at line 1136 of file HDF5CF.cc.

◆ has_latlon_cf_units()

bool File::has_latlon_cf_units	(	Attribute *	attr,
		const std::string &	varfullpath,
		bool	is_lat )

protectedinherited

Definition at line 1822 of file HDF5CF.cc.

◆ Have_Grid_Mapping_Attrs()

bool GMFile::Have_Grid_Mapping_Attrs ( )

overridevirtual

Check if having Grid Mapping Attrs.

Reimplemented from HDF5CF::File.

Definition at line 6798 of file HDF5GMCF.cc.

◆ HaveUnlimitedDim()

bool HDF5CF::File::HaveUnlimitedDim ( ) const

inlineinherited

Has unlimited dimensions.

Definition at line 657 of file HDF5CF.h.

◆ ignored_dimscale_ref_list()

bool File::ignored_dimscale_ref_list ( const Var * var ) const

protectedinherited

Definition at line 2523 of file HDF5CF.cc.

◆ Insert_One_NameSizeMap_Element()

void File::Insert_One_NameSizeMap_Element	(	const std::string &	name,
		hsize_t	size,
		bool	unlimited )

protectedinherited

Definition at line 1542 of file HDF5CF.cc.

◆ Insert_One_NameSizeMap_Element2()

void File::Insert_One_NameSizeMap_Element2	(	std::map< std::string, hsize_t > &	,
		std::map< std::string, bool > &	,
		const std::string &	name,
		hsize_t	size,
		bool	unlimited ) const

protectedinherited

Definition at line 1557 of file HDF5CF.cc.

◆ Is_geolatlon()

bool File::Is_geolatlon	(	const std::string &	var_name,
		bool	is_lat ) const

protectedinherited

Definition at line 2004 of file HDF5CF.cc.

◆ Is_Hybrid_EOS5()

bool GMFile::Is_Hybrid_EOS5 ( ) const

Definition at line 6518 of file HDF5GMCF.cc.

◆ Is_netCDF_Dimension()

bool GMFile::Is_netCDF_Dimension ( const Var * var ) const

protected

Definition at line 6485 of file HDF5GMCF.cc.

◆ is_special_gpm_l3()

bool HDF5CF::GMFile::is_special_gpm_l3 ( ) const

inline

Definition at line 842 of file HDF5CF.h.

◆ Is_Str_Attr()

bool File::Is_Str_Attr	(	Attribute *	attr,
		const std::string &	varfullpath,
		const std::string &	attrname,
		const std::string &	strvalue )

protectedinherited

Definition at line 1810 of file HDF5CF.cc.

◆ is_var_under_group()

bool File::is_var_under_group	(	const std::string &	varname,
		const std::string &	grpname,
		const int	var_rank,
		std::vector< size_t > &	var_size ) const

protectedinherited

Definition at line 2164 of file HDF5CF.cc.

◆ Obtain_1DLatLon_CVs()

void GMFile::Obtain_1DLatLon_CVs	(	std::vector< GMCVar * > &	cvar_1dlat,
		std::vector< GMCVar * > &	cvar_1dlon )

protected

Definition at line 3648 of file HDF5GMCF.cc.

◆ Obtain_2DLatLon_Vars()

void GMFile::Obtain_2DLatLon_Vars	(	std::vector< Var * > &	var_2dlat,
		std::vector< Var * > &	var_2dlon,
		std::map< std::string, int > &	latlon2d_path_to_index )

protected

Definition at line 3688 of file HDF5GMCF.cc.

◆ Obtain_2DLLCVar_Candidate()

void GMFile::Obtain_2DLLCVar_Candidate	(	std::vector< Var * > &	var_2dlat,
		std::vector< Var * > &	var_2dlon,
		std::map< std::string, int > &	latlon2d_path_to_index )

protected

Definition at line 3802 of file HDF5GMCF.cc.

◆ Obtain_2DLLVars_With_Dims_not_1DLLCVars()

void GMFile::Obtain_2DLLVars_With_Dims_not_1DLLCVars	(	std::vector< Var * > &	var_2dlat,
		std::vector< Var * > &	var_2dlon,
		const std::vector< GMCVar * > &	cvar_1dlat,
		const std::vector< GMCVar * > &	cvar_1dlon,
		std::map< std::string, int > &	latlon2d_path_to_index )

protected

Definition at line 3748 of file HDF5GMCF.cc.

◆ Obtain_unique_2dCV()

void GMFile::Obtain_unique_2dCV	(	std::vector< Var * > &	var_ll,
		std::map< std::string, int > &	latlon2d_path_to_index )

protected

Definition at line 3954 of file HDF5GMCF.cc.

◆ release_standalone_GMCVar_vector()

void GMFile::release_standalone_GMCVar_vector ( std::vector< GMCVar * > & tempgc_vars )

protected

Definition at line 6977 of file HDF5GMCF.cc.

◆ release_standalone_var_vector()

void File::release_standalone_var_vector ( std::vector< Var * > & vars )

protectedinherited

Definition at line 2817 of file HDF5CF.cc.

◆ Remove_2DLLCVar_Final_Candidate_from_Vars()

void GMFile::Remove_2DLLCVar_Final_Candidate_from_Vars ( std::vector< int > & var2d_index )

protected

Definition at line 4040 of file HDF5GMCF.cc.

◆ Remove_EOS5_Strings()

bool GMFile::Remove_EOS5_Strings ( std::string & var_name ) const

protected

Definition at line 6694 of file HDF5GMCF.cc.

◆ Remove_EOS5_Strings_NonEOS_Fields()

bool GMFile::Remove_EOS5_Strings_NonEOS_Fields ( std::string & var_name ) const

protected

Definition at line 6767 of file HDF5GMCF.cc.

◆ remove_netCDF_internal_attributes()

void File::remove_netCDF_internal_attributes ( bool include_attr )

protectedinherited

Definition at line 2266 of file HDF5CF.cc.

◆ Remove_OMPSNPP_InputPointers()

void GMFile::Remove_OMPSNPP_InputPointers ( )

protected

Definition at line 274 of file HDF5GMCF.cc.

◆ Remove_Unneeded_Objects()

void GMFile::Remove_Unneeded_Objects ( )

Remove unneeded objects.

Definition at line 223 of file HDF5GMCF.cc.

◆ Remove_Unused_FakeDimVars()

void GMFile::Remove_Unused_FakeDimVars ( )

Unsupported datatype array may generate FakeDim. Remove them.

Definition at line 6806 of file HDF5GMCF.cc.

◆ Rename_NC4_NonCoordVars()

void GMFile::Rename_NC4_NonCoordVars ( ) const

Remove the _nc4_non_coord from the variable new names.

Definition at line 6851 of file HDF5GMCF.cc.

◆ Replace_Var_Attrs()

void File::Replace_Var_Attrs	(	const Var *	src,
		Var *	target )

protectedinherited

Definition at line 2132 of file HDF5CF.cc.

◆ Replace_Var_Info()

void File::Replace_Var_Info	(	const Var *	src,
		Var *	target )

protectedinherited

Definition at line 2075 of file HDF5CF.cc.

◆ Replace_Var_Str_Attr()

void File::Replace_Var_Str_Attr	(	Var *	var,
		const std::string &	attr_name,
		const std::string &	strvalue )

protectedinherited

Definition at line 1968 of file HDF5CF.cc.

◆ Retrieve_H5_Attr_Info()

void File::Retrieve_H5_Attr_Info	(	Attribute *	attr,
		hid_t	obj_id,
		const int	j,
		bool &	unsup_attr_dtype,
		bool &	unsup_attr_dspace ) const

protectedinherited

Definition at line 594 of file HDF5CF.cc.

◆ Retrieve_H5_Attr_Value()

void File::Retrieve_H5_Attr_Value	(	Attribute *	attr,
		const std::string &	) const

protectedinherited

Definition at line 760 of file HDF5CF.cc.

◆ Retrieve_H5_CVar_Supported_Attr_Values()

void GMFile::Retrieve_H5_CVar_Supported_Attr_Values ( )

overridevirtual

Retrieve coordinate variable attributes.

Implements HDF5CF::File.

Definition at line 298 of file HDF5GMCF.cc.

◆ Retrieve_H5_Info()

void GMFile::Retrieve_H5_Info	(	const char *	path,
		hid_t	file_id,
		bool	include_attr )

overridevirtual

Retrieve DDS information from the HDF5 file; real implementation for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 180 of file HDF5GMCF.cc.

◆ Retrieve_H5_Obj()

void File::Retrieve_H5_Obj	(	hid_t	grp_id,
		const char *	gname,
		bool	include_attr )

protectedinherited

Definition at line 231 of file HDF5CF.cc.

◆ Retrieve_H5_Supported_Attr_Values()

void GMFile::Retrieve_H5_Supported_Attr_Values ( )

overridevirtual

Retrieve attribute values for the supported HDF5 datatypes for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 311 of file HDF5GMCF.cc.

◆ Retrieve_H5_Var_Attr_Values()

void File::Retrieve_H5_Var_Attr_Values ( Var * var )

virtualinherited

Retrieve attribute values for a variable.

Definition at line 753 of file HDF5CF.cc.

◆ Retrieve_H5_VarCompRatio()

float File::Retrieve_H5_VarCompRatio	(	const Var *	var,
		const hid_t	dset_id ) const

protectedinherited

Definition at line 453 of file HDF5CF.cc.

◆ Retrieve_H5_VarDim()

void File::Retrieve_H5_VarDim	(	Var *	,
		hid_t	dset_id,
		const std::string &	varname,
		bool &	unsup_var_dspace )

protectedinherited

Definition at line 521 of file HDF5CF.cc.

◆ Retrieve_H5_VarType()

void File::Retrieve_H5_VarType	(	Var *	,
		hid_t	dset_id,
		const std::string &	varname,
		bool &	unsup_var_dtype ) const

protectedinherited

Definition at line 487 of file HDF5CF.cc.

◆ Retrieve_Str_Attr_Value()

string File::Retrieve_Str_Attr_Value	(	Attribute *	attr,
		const std::string &	var_path ) const

protectedinherited

Definition at line 1797 of file HDF5CF.cc.

◆ setDap4()

void HDF5CF::File::setDap4 ( bool is_dap4 )

inlineinherited

Definition at line 662 of file HDF5CF.h.

◆ Update_Bounds_Attr()

void GMFile::Update_Bounds_Attr ( )

Update the Bounds attribute to follow the CF conventions.

Definition at line 6919 of file HDF5GMCF.cc.

◆ Update_M2DLatLon_Dimscale_CVs()

void GMFile::Update_M2DLatLon_Dimscale_CVs ( )

protected

Definition at line 3309 of file HDF5GMCF.cc.

◆ Update_NC4_PureDimSize()

void GMFile::Update_NC4_PureDimSize ( )

Update the netCDF-4 pure dimension size when the pure dimension is an unlimited dimension.

Definition at line 6950 of file HDF5GMCF.cc.

◆ Update_Product_Type()

void GMFile::Update_Product_Type ( )

Update "product type" attributes for general HDF5 products.

Definition at line 199 of file HDF5GMCF.cc.

Member Data Documentation

◆ _is_dap4

bool HDF5CF::File::_is_dap4 = false

protectedinherited

Definition at line 815 of file HDF5CF.h.

◆ addeddimindex

int HDF5CF::File::addeddimindex = 0

protectedinherited

Definition at line 809 of file HDF5CF.h.

◆ check_ignored

bool HDF5CF::File::check_ignored = false

protectedinherited

Definition at line 812 of file HDF5CF.h.

◆ dimname_to_dimsize

std::map<std::string, hsize_t> HDF5CF::File::dimname_to_dimsize

protectedinherited

Definition at line 802 of file HDF5CF.h.

◆ dimname_to_unlimited

std::map<std::string, bool> HDF5CF::File::dimname_to_unlimited

protectedinherited

Definition at line 805 of file HDF5CF.h.

◆ dimnamelist

std::set<std::string> HDF5CF::File::dimnamelist

protectedinherited

Definition at line 800 of file HDF5CF.h.

◆ dimsize_to_fakedimname

std::map<hsize_t, std::string> HDF5CF::File::dimsize_to_fakedimname

protectedinherited

Handle added dimension names.

Definition at line 808 of file HDF5CF.h.

◆ dup_dimsize_dimname

std::vector<std::pair<hsize_t, std::string> > HDF5CF::File::dup_dimsize_dimname

protectedinherited

Definition at line 810 of file HDF5CF.h.

◆ fileid

hid_t HDF5CF::File::fileid

protectedinherited

Definition at line 781 of file HDF5CF.h.

◆ groups

std::vector<Group*> HDF5CF::File::groups

protectedinherited

Non-root group vectors.

Definition at line 791 of file HDF5CF.h.

◆ have_ignored

bool HDF5CF::File::have_ignored = false

protectedinherited

Definition at line 813 of file HDF5CF.h.

◆ have_udim

bool HDF5CF::File::have_udim = false

protectedinherited

Definition at line 814 of file HDF5CF.h.

◆ ignored_msg

std::string HDF5CF::File::ignored_msg

protectedinherited

Definition at line 817 of file HDF5CF.h.

◆ iscoard

bool HDF5CF::File::iscoard = false

protectedinherited

Definition at line 816 of file HDF5CF.h.

◆ path

std::string HDF5CF::File::path

protectedinherited

Definition at line 780 of file HDF5CF.h.

◆ root_attrs

std::vector<Attribute *> HDF5CF::File::root_attrs

protectedinherited

Root attribute vectors.

Definition at line 788 of file HDF5CF.h.

◆ rootid

hid_t HDF5CF::File::rootid = -1

protectedinherited

Definition at line 782 of file HDF5CF.h.

◆ unsupported_attr_dspace

bool HDF5CF::File::unsupported_attr_dspace = false

protectedinherited

Definition at line 797 of file HDF5CF.h.

◆ unsupported_attr_dtype

bool HDF5CF::File::unsupported_attr_dtype = false

protectedinherited

Definition at line 794 of file HDF5CF.h.

◆ unsupported_var_attr_dspace

bool HDF5CF::File::unsupported_var_attr_dspace = false

protectedinherited

Definition at line 798 of file HDF5CF.h.

◆ unsupported_var_dspace

bool HDF5CF::File::unsupported_var_dspace = false

protectedinherited

Definition at line 796 of file HDF5CF.h.

◆ unsupported_var_dtype

bool HDF5CF::File::unsupported_var_dtype = false

protectedinherited

Definition at line 793 of file HDF5CF.h.

◆ vars

std::vector<Var *> HDF5CF::File::vars

protectedinherited

Var vectors.

Definition at line 785 of file HDF5CF.h.

The documentation for this class was generated from the following files:

Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Constructor & Destructor Documentation

◆ GMFile()

◆ ~GMFile()

Member Function Documentation

◆ Add_Aqu_Attrs()

◆ Add_Dim_Name()

◆ Add_Dim_Name_ACOS_L2S_OCO2_L1B()

◆ Add_Dim_Name_Aqu_L3()

◆ Add_Dim_Name_Dimscale_General_Product()

◆ Add_Dim_Name_General_Product()

◆ Add_Dim_Name_GPM()

◆ Add_Dim_Name_LatLon1D_Or_CoordAttr_General_Product()

◆ Add_Dim_Name_LatLon2D_General_Product()

◆ Add_Dim_Name_Mea_Ozonel3z()

◆ Add_Dim_Name_Mea_SeaWiFS()

◆ Add_Dim_Name_OBPG_L3()

◆ Add_Dim_Name_OSMAPL2S()

◆ Add_GPM_Attrs()

◆ add_ignored_droplongstr_hdr()

◆ add_ignored_grp_longstr_info()

◆ add_ignored_info_attrs()

◆ add_ignored_info_links()

◆ add_ignored_info_links_header()

◆ add_ignored_info_namedtypes()

◆ add_ignored_info_obj_header()

◆ add_ignored_info_objs()

◆ add_ignored_info_page_header()

◆ add_ignored_var_longstr_info()

◆ add_no_ignored_info()

◆ Add_One_FakeDim_Name()

◆ Add_One_Float_Attr()

◆ Add_Path_Coord_Attr()

◆ Add_SeaWiFS_Attrs()

◆ Add_Str_Attr()

◆ Add_Supplement_Attrs()

◆ Add_UseDimscale_Var_Dim_Names_General_Product()

◆ Add_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone()

◆ Add_VarPath_In_Coordinates_Attr()

◆ Adjust_Dim_Name()

◆ Adjust_Duplicate_FakeDim_Name()

◆ Adjust_Duplicate_FakeDim_Name2()

◆ Adjust_GPM_L3_Obj_Name()

◆ Adjust_H5_Attr_Value()

◆ Adjust_Mea_Ozone_Obj_Name()

◆ Adjust_Obj_Name()

◆ Build_lat1D_latlon_candidate()

◆ Build_latg1D_latlon_candidate()

◆ Build_unique_latlon_candidate()

◆ Change_Attr_One_Str_to_Others()

◆ Check_1DGeolocation_Dimscale()

◆ Check_And_Update_New_GPM_L3()

◆ check_cv()

◆ Check_Dimscale_General_Product_Pattern()

◆ Check_DropLongStr()

◆ Check_General_Product_Pattern()

◆ Check_Grid_Mapping_FullPath()

◆ Check_Grid_Mapping_VarName()

◆ Check_LatLon1D_General_Product_Pattern()

◆ Check_LatLon1D_General_Product_Pattern_Name_Size()

◆ Check_LatLon2D_General_Product_Pattern()

◆ Check_LatLon2D_General_Product_Pattern_Name_Size()

◆ Check_LatLon_With_Coordinate_Attr_General_Product_Pattern()

◆ Check_Var_2D_CVars()

◆ Check_VarDropLongStr()

◆ Coord_Match_LatLon_NameSize()

◆ Coord_Match_LatLon_NameSize_Same_Group()

◆ Correct_GPM_L1_LatLon_units()

◆ Create_Missing_CV()

◆ Flatten_Obj_Name()

◆ Flatten_VarPath_In_Coordinates_Attr()

◆ Gen_DimScale_VarAttr_Unsupported_Dtype_Info()

◆ Gen_GM_VarAttr_Unsupported_Dtype_Info()

◆ Gen_Group_Unsupported_Dtype_Info()

◆ Gen_Unsupported_Dspace_Info()

◆ Gen_Unsupported_Dtype_Info()

◆ Gen_Var_Unsupported_Dtype_Info()