HDFSPArray_VDField.cc

// This file is part of the hdf4 data handler for the OPeNDAP data server.
// It retrieves the Vdata fields from NASA HDF4 data products.
// Each Vdata will be decomposed into individual Vdata fields.
// Each field will be mapped to A DAP variable.
 
//  Authors:   Kent Yang <myang6@hdfgroup.org>
// Copyright (c) The HDF Group
 
#include "HDFSPArray_VDField.h"
#include <iostream>
#include <sstream>
#include <cassert>
#include <libdap/debug.h>
#include "hdf.h"
#include "mfhdf.h"
#include <libdap/InternalErr.h>
#include <BESDebug.h>
#include "HDFCFUtil.h"
#include "HDF4RequestHandler.h"
 
using namespace std;
using namespace libdap;
#define SIGNED_BYTE_TO_INT32 1
 
 
bool
HDFSPArray_VDField::read ()
{
 
    BESDEBUG("h4","Coming to HDFSPArray_VDField read "<<endl);
    if (length() == 0)
        return true; 
 
    bool check_pass_fileid_key = HDF4RequestHandler::get_pass_fileid();
 
    // Declaration of offset,count and step
    vector<int>offset;
    offset.resize(rank);
    vector<int>count;
    count.resize(rank);
    vector<int>step;
    step.resize(rank);
 
    // Obtain offset,step and count from the client expression constraint
    int nelms = format_constraint(offset.data(),step.data(),count.data());
 
    int32 file_id = -1;
 
    if(true == check_pass_fileid_key) 
        file_id = fileid;
 
    else {
        // Open the file
        file_id = Hopen (filename.c_str (), DFACC_READ, 0);
        if (file_id < 0) {
            ostringstream eherr;
            eherr << "File " << filename.c_str () << " cannot be open.";
            throw InternalErr (__FILE__, __LINE__, eherr.str ());
        }
    }
 
    // Start the Vdata interface
    int32 vdata_id = 0;
    if (Vstart (file_id) < 0) {
        HDFCFUtil::close_fileid(-1,file_id,-1,-1,check_pass_fileid_key);
        ostringstream eherr;
        eherr << "This file cannot be open.";
        throw InternalErr (__FILE__, __LINE__, eherr.str ());
    }
 
    // Attach the vdata
    vdata_id = VSattach (file_id, vdref, "r");
    if (vdata_id == -1) {
        Vend (file_id);
        HDFCFUtil::close_fileid(-1,file_id,-1,-1,check_pass_fileid_key);
        ostringstream eherr;
        eherr << "Vdata cannot be attached.";
        throw InternalErr (__FILE__, __LINE__, eherr.str ());
    }
 
    try {
        int32 r = -1;
 
        // Seek the position of the starting point
        if (VSseek (vdata_id, (int32) offset[0]) == -1) {
            ostringstream eherr;
            eherr << "VSseek failed at " << offset[0];
            throw InternalErr (__FILE__, __LINE__, eherr.str ());
        }
 
        // Prepare the vdata field
        if (VSsetfields (vdata_id, fdname.c_str ()) == -1) {
            ostringstream eherr;
            eherr << "VSsetfields failed with the name " << fdname;
            throw InternalErr (__FILE__, __LINE__, eherr.str ());
        }
 
        int32 vdfelms = fdorder * count[0] * step[0];
 
        // Loop through each data type
        switch (dtype) {
            case DFNT_INT8:
            {
                vector<int8> val;
                val.resize(nelms);
 
                vector<int8>orival;
                orival.resize(vdfelms);
 
                // Read the data
                r = VSread (vdata_id, (uint8 *) orival.data(), 1+(count[0] -1)* step[0],
                FULL_INTERLACE);
 
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                // Obtain the subset portion of the data
                if (fdorder > 1) {
                   for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] =
                            orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
 
#ifndef SIGNED_BYTE_TO_INT32
                set_value ((dods_byte *) val.data(), nelms);
#else
                vector<int32>newval;
                newval.resize(nelms);
 
                for (int counter = 0; counter < nelms; counter++)
                    newval[counter] = (int32) (val[counter]);
 
                set_value ((dods_int32 *) newval.data(), nelms);
 
#endif
            }
 
                break;
            case DFNT_UINT8:
            case DFNT_UCHAR8:
            {
 
                vector<uint8>val;
                val.resize(nelms);
          
                vector<uint8>orival;
                orival.resize(vdfelms);
 
                r = VSread (vdata_id, orival.data(), 1+(count[0] -1)* step[0], FULL_INTERLACE);
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                if (fdorder > 1) {
                    for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] = orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
                set_value ((dods_byte *) val.data(), nelms);
            }
 
                break;
 
            case DFNT_INT16:
            {
                vector<int16>val;
                val.resize(nelms);
                vector<int16>orival;
                orival.resize(vdfelms);
 
                r = VSread (vdata_id, (uint8 *) orival.data(), 1+(count[0] -1)* step[0],
                        FULL_INTERLACE);
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                if (fdorder > 1) {
                    for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] = orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
                set_value ((dods_int16 *) val.data(), nelms);
            }
                break;
 
            case DFNT_UINT16:
 
            {
                vector<uint16>val;
                val.resize(nelms);
 
                vector<uint16>orival;
                orival.resize(vdfelms);
 
                r = VSread (vdata_id, (uint8 *) orival.data(), 1+(count[0] -1)* step[0],
                        FULL_INTERLACE);
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                if (fdorder > 1) {
                    for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] = orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
                set_value ((dods_uint16 *) val.data(), nelms);
            }
                break;
            case DFNT_INT32:
            {
                vector<int32>val;
                val.resize(nelms);
                vector<int32>orival;
                orival.resize(vdfelms);
 
                r = VSread (vdata_id, (uint8 *) orival.data(), 1+(count[0] -1)* step[0],
                        FULL_INTERLACE);
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                if (fdorder > 1) {
                    for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] = orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
                set_value ((dods_int32 *) val.data(), nelms);
            }
                break;
 
            case DFNT_UINT32:
            {
    
                vector<uint32>val;
                val.resize(nelms);
 
                vector<uint32>orival;
                orival.resize(vdfelms);
 
                r = VSread (vdata_id, (uint8 *) orival.data(), 1+(count[0] -1)* step[0],
                        FULL_INTERLACE);
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                if (fdorder > 1) {
                    for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] = orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
                set_value ((dods_uint32 *) val.data(), nelms);
            }
                break;
            case DFNT_FLOAT32:
            {
                vector<float32>val;
                val.resize(nelms);
                vector<float32>orival;
                orival.resize(vdfelms);
 
                r = VSread (vdata_id, (uint8 *) orival.data(), 1+(count[0] -1)* step[0],
                        FULL_INTERLACE);
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                if (fdorder > 1) {
                    for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] = orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
                set_value ((dods_float32 *) val.data(), nelms);
            }
                break;
            case DFNT_FLOAT64:
            {
 
                vector<float64>val;
                val.resize(nelms);
 
                vector<float64>orival;
                orival.resize(vdfelms);
 
                r = VSread (vdata_id, (uint8 *) orival.data(), 1+(count[0] -1)* step[0],
                        FULL_INTERLACE);
                if (r == -1) {
                    ostringstream eherr;
                    eherr << "VSread failed.";
                    throw InternalErr (__FILE__, __LINE__, eherr.str ());
                }
 
                if (fdorder > 1) {
                    for (int i = 0; i < count[0]; i++)
                        for (int j = 0; j < count[1]; j++)
                            val[i * count[1] + j] = orival[i * fdorder * step[0] + offset[1] + j * step[1]];
                }
                else {
                    for (int i = 0; i < count[0]; i++)
                        val[i] = orival[i * step[0]];
                }
 
                set_value ((dods_float64 *) val.data(), nelms);
            }
                break;
            default:
                throw InternalErr (__FILE__, __LINE__, "unsupported data type.");
        }
 
        if (VSdetach (vdata_id) == -1) {
            ostringstream eherr;
            eherr << "VSdetach failed.";
            throw InternalErr (__FILE__, __LINE__, eherr.str ());
        }
 
        if (Vend (file_id) == -1) {
            ostringstream eherr;
 
            eherr << "VSdetach failed.";
            throw InternalErr (__FILE__, __LINE__, eherr.str ());
        }
        HDFCFUtil::close_fileid(-1,file_id,-1,-1,check_pass_fileid_key);
   }
   catch(...) {
        VSdetach(vdata_id);
        Vend(file_id);
        HDFCFUtil::close_fileid(-1,fileid,-1,-1,check_pass_fileid_key);
        throw;
 
   }
 
    return true;
}
 
// Standard way of DAP handlers to pass the coordinates of the subsetted region to the handlers
// Return the number of elements to read. 
int
HDFSPArray_VDField::format_constraint (int *offset, int *step, int *count)
{
    int nels = 1;
    int id = 0;
 
    Dim_iter p = dim_begin ();
    while (p != dim_end ()) {
 
        int start = dimension_start (p, true);
        int stride = dimension_stride (p, true);
        int stop = dimension_stop (p, true);
 
        // Check for illegal  constraint
        if (start > stop) {
            ostringstream oss;
            oss << "Array/Grid hyperslab start point "<< start <<
                   " is greater than stop point " <<  stop <<".";
            throw Error(malformed_expr, oss.str());
        }
 
        offset[id] = start;
        step[id] = stride;
        count[id] = ((stop - start) / stride) + 1;      // count of elements
        nels *= count[id];              // total number of values for variable
 
        BESDEBUG ("h4",
                         "=format_constraint():"
                         << "id=" << id << " offset=" << offset[id]
                         << " step=" << step[id]
                         << " count=" << count[id]
                         << endl);
 
        id++;
        p++;
    }
 
    return nels;
}